YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996727, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.89
Non-Cytoplasmic	31	43	0.81
Transmembrane Helix	44	67	0.91
Cytoplasmic	68	85	0.96
Transmembrane Helix	86	108	0.90
Non-Cytoplasmic	109	144	0.94
Transmembrane Helix	145	164	0.96
Cytoplasmic	165	173	0.84
Transmembrane Helix	174	193	0.92
Non-Cytoplasmic	194	215	0.93
Transmembrane Helix	216	240	0.87
Cytoplasmic	241	253	0.90
Transmembrane Helix	254	276	0.86
Non-Cytoplasmic	277	299	0.80
Transmembrane Helix	300	322	0.84
Cytoplasmic	323	341	0.85
Transmembrane Helix	342	364	0.91
Non-Cytoplasmic	365	383	0.89
Transmembrane Helix	384	405	0.91
Cytoplasmic	406	425	0.95
Transmembrane Helix	426	449	0.85
Non-Cytoplasmic	450	453	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKKRETFS SSLAVFFATL GSAIGLGNIW RFPYITGMNG GGGFLLIYFL CILFVGIPIM  60
   61 ISEFYIGRKT RSNAVGAFRK LNHSNFKFIG LMGVLAAFLI MFFYSSVAGW VYSYVFKSII 120
  121 GEFNNITVEK SKELFNLTIS HPFYPILWQF VVLLVVAIIL IFGVKKGIER VTKTLMPVLF 180
  181 LLILIIDIRA LTLDGAREGV NFLINVDFSK ITRDSILIAL GLAFFKLSIG MGTMITYGSY 240
  241 FTRENNMPAT AAKVAFSDTL VSLLAGLAIF PVVFTFNMEP AAGPGLLFIT IPLVFTKLPL 300
  301 GTVLLTLFFI LTSIAATTAM ISMVEVPVAY FAEEKGMERK KAVLLTTAII FVFGVFATLS 360
  361 LGGSPVISNF KLFGKNIFDL FDYVSSNILL PLGGLFIAIF VGYFVKKEDL YQELGNFGLI 420
  421 NNQRIIDVFY LIVRYVTPIL VIVIFLNSLG LLG