YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBS_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTFLLGLT FFTRIPVPGK LNFSEEKFNR APIFLPAYGL VTGGILALII ELFGRSFPGF  60
   61 FWAGVIIAGQ IYLSGALHID GLLDSLDAIY SNRDREKRLE ILKDSRVGSM AVAFFGAFLI 120
  121 LKYGSYASFT PKVQAFTVLI SEIILRGTGY LVIYSFPYVG SSLGRGFKDN ASTAGLIFTL 180
  181 GQTLIFTLGA AAFFNFSLIK ILIILLLAYL FAFVVAARWQ QFFGGLTGDN YGGIMELTGL 240
  241 FVPVAVLLIN NIGVV

Type	Start	End	Confidence
Cytoplasmic	1	32	0.87
Transmembrane Helix	33	53	0.92
Non-Cytoplasmic	54	59	0.76
Transmembrane Helix	60	82	0.86
Cytoplasmic	83	104	0.82
Transmembrane Helix	105	126	0.86
Non-Cytoplasmic	127	137	0.74
Transmembrane Helix	138	158	0.65
Cytoplasmic	159	170	0.55
Transmembrane Helix	171	194	0.83
Non-Cytoplasmic	195	197	0.53
Transmembrane Helix	198	219	0.87
Cytoplasmic	220	230	0.53
Transmembrane Helix	231	253	0.83
Non-Cytoplasmic	254	255	0.54