YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996692, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.88
Transmembrane Helix	13	32	0.95
Cytoplasmic	33	38	0.83
Transmembrane Helix	39	57	0.94
Non-Cytoplasmic	58	71	0.74
Transmembrane Helix	72	94	0.87
Cytoplasmic	95	114	0.93
Transmembrane Helix	115	146	0.78
Non-Cytoplasmic	147	152	0.56
Transmembrane Helix	153	185	0.75
Cytoplasmic	186	197	0.55
Transmembrane Helix	198	220	0.76
Non-Cytoplasmic	221	246	0.59
Transmembrane Helix	247	268	0.91
Cytoplasmic	269	293	0.90
Transmembrane Helix	294	313	0.83
Non-Cytoplasmic	314	353	0.88
Transmembrane Helix	354	376	0.89
Cytoplasmic	377	391	0.84
Transmembrane Helix	392	412	0.88
Non-Cytoplasmic	413	425	0.67
Transmembrane Helix	426	444	0.82
Cytoplasmic	445	507	0.83
Transmembrane Helix	508	529	0.91
Non-Cytoplasmic	530	556	0.91
Transmembrane Helix	557	578	0.91
Cytoplasmic	579	581	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWTQNYDPF NNIALSALVA AIPIFFLFWA LAIKKMKGYI AGLLTLLLAI IVVIFEYKMP  60
   61 VNLALMAAVN GALYGLFPIG WIVITAVYLY NLTVKAGQFE IIKDSIASIT EDRRLQALLI 120
  121 AFAFGAFLEG AAGFGTPVAI TAAMLVGLGF NPLYAAGICL IANTAPVAFG GIGIPIIVAG 180
  181 QVTGIDAMAI SKMVGRQLPL LSVAIPAWLV FIMSGWKGLL EVLPAVLVTG ISFAGAQWFS 240
  241 ANYLSPMLPD IISSLVSIIA LVLFLKVWKP KNIWRFANEP PATLQVKKHS AGAILKAWSP 300
  301 FIVLTILVGD WGLNQVKNVL DLVTLKFHVP GLDGLIYKPG ADKAMEAVFK FNWLSAAGTA 360
  361 ILIAAIITIL ILRISFKDAV SVFVDTLKSL KYPLINIAAV LGFAYVANFS GMSQTLGLSL 420
  421 TVTGKAFAFL SPMLGWLGVF ITGSDTSANA LFAKLQAASA EKLGIDPVLT VAANSSGGVT 480
  481 GKMISPQSIA VATASVGLVG KEAELFRFTV LHSFLFAVVV GIITYLQAYY LKSWIPVYKM 540
  541 IESAGAAAQA QVETGPGLTI LGITAVVILA LWGLVAALNK K