YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996596, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPVRFFALF ILILCLKTIA LAEEPQIIGR AAAVINVNSG KFVYLKNADQ KMYPASTTKI  60
   61 MTTLIALEKG NLSDRVYIDK EACYVEGSAI WLNPGEQLSL EDLLYSIMLN SANDSAIAVA 120
  121 KYIGGDVATF VQEMNDKARE LGAKNTHFVN PNGLPNDDHY TTARDLALIA RAAMQNPKFR 180
  181 EIAATKTKVI NRDPKYLRFL QNHNKLLWRY EGANGIKTGY TVKARQCLVA SAARDGEEFI 240
  241 AVVLGSEGRN VYDDATKLLD YAFNNFKTVK LVSKGQEFGK VEVAGGKEPV KLIAAEDLYD 300
  301 TVNRRQEPQF DYQKKIEKLQ APVKAGQRVG KIVVKENENV VGEVKLVAFN SVEPTLIYSS 360
  361 RKLIYPGVLF LAGLFLTFQF LKKYGRIKPK Y

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	362	0.99
Transmembrane Helix	363	381	0.92
Cytoplasmic	382	391	0.86