YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044468, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.91
Transmembrane Helix	15	35	0.92
Cytoplasmic	36	52	0.93
Transmembrane Helix	53	74	0.89
Non-Cytoplasmic	75	93	0.85
Transmembrane Helix	94	115	0.93
Cytoplasmic	116	125	0.83
Transmembrane Helix	126	146	0.96
Non-Cytoplasmic	147	184	0.96
Transmembrane Helix	185	205	0.94
Cytoplasmic	206	215	0.91
Transmembrane Helix	216	235	0.94
Non-Cytoplasmic	236	318	0.98
Transmembrane Helix	319	340	0.91
Cytoplasmic	341	351	0.86
Transmembrane Helix	352	375	0.82
Non-Cytoplasmic	376	402	0.95
Transmembrane Helix	403	425	0.88
Cytoplasmic	426	444	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTALSRLQ FTITAIFHFF YVPLTLGLAV LIAYMEYKYW RTNDEVWDKM ARFWTKLFAI  60
   61 NFAVGVASGI TMEFQFGTNW ADYSRFVGDI FGAPLAAEGV FAFFLESTFI GLLLFGRDKI 120
  121 SRGMRFLSAV LVAFGTNLSA FWIIAANSWQ QTPAGYKLEG GRAILTSFKE AVFSPSTLPR 180
  181 FLHTLDGAYV TAAFFVMGIS AYYLLRKKNV EIARPSLRVG IIFGLIFALL QIYFGDIHAK 240
  241 QVAVTQPAKL AAFEGLWETQ EKAPLLILGW PDTKNEKNVF EIGVPGLLSY LAHGDVNQPV 300
  301 KGIKEFPREE RPPILPTFLS FHLMVGLGIL MALALLWAVV ELIRGKIYNN RLLLKLLLYF 360
  361 IPLPYIANEL GWITAEVGRQ PWIVYGLLKT SDAVSKLDPG QLVLTNLLFI AVYLFLGGLM 420
  421 LYLMVRTVKT HNENALGVAE REVA