YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEFIQQLIN GISVGSIYAL IALGYTMVYG IIKLINFAHG DVYMLGAFVG LYATAVLKMS  60
   61 FVPALIVSMI ACAILGIIIE RLAYRPLRNS PKIVILITAI GVSLLLEYTT MFFLGPQPRA 120
  121 FPEVFKQVSY PLLGGKVTIS NREILIIVVT IILMLLLQYI VHNTKIGKAM RAVSYDMQAA 180
  181 RLMGINVDTT ISITFAIGSA LAAAAGVLVG VYYNKVFPLM GIMFGLKAFV SAVLGGIGII 240
  241 PGAMTGGLIL GITESLVSGY GSSLYRDPVA FVILIIILLV KPSGIFGKNV REKV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.64
Transmembrane Helix	8	32	0.81
Non-Cytoplasmic	33	53	0.50
Transmembrane Helix	54	79	0.82
Cytoplasmic	80	92	0.74
Transmembrane Helix	93	114	0.90
Non-Cytoplasmic	115	143	0.83
Transmembrane Helix	144	162	0.93
Cytoplasmic	163	186	0.77
Transmembrane Helix	187	212	0.81
Non-Cytoplasmic	213	227	0.63
Transmembrane Helix	228	252	0.86
Cytoplasmic	253	263	0.60
Transmembrane Helix	264	285	0.78
Non-Cytoplasmic	286	294	0.57