YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996499, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	29	0.93
Non-Cytoplasmic	30	37	0.80
Transmembrane Helix	38	61	0.89
Cytoplasmic	62	76	0.96
Transmembrane Helix	77	98	0.88
Non-Cytoplasmic	99	112	0.81
Transmembrane Helix	113	132	0.91
Cytoplasmic	133	139	0.85
Transmembrane Helix	140	160	0.92
Non-Cytoplasmic	161	177	0.91
Transmembrane Helix	178	199	0.92
Cytoplasmic	200	212	0.87
Transmembrane Helix	213	234	0.94
Non-Cytoplasmic	235	265	0.95
Transmembrane Helix	266	289	0.91
Cytoplasmic	290	297	0.93
Transmembrane Helix	298	320	0.85
Non-Cytoplasmic	321	327	0.92
Transmembrane Helix	328	350	0.91
Cytoplasmic	351	356	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISWGEGVA LIIGATVGSG IISLPAVMAE AAKSSGWLLI FPGGFINFLS LLTIVVVQSY  60
   61 WPDQTFIEYG EKLYGKFLSR FFALIFVYYF LWLASLVLRV FTDFAADTLL EETPTYIMIM 120
  121 LFLLLFFYFC NSGYETVKNI NVIFMFIKLA LLFVVTFFII NKWEVEYLKP VINPEINLLK 180
  181 GIFGSVFSFS GFSIFLYFAK DFRDLKDGIK ASVVGMGLVT LIYAAVCLVG LMIFGPESLA 240
  241 RMRYPSYEII KMLNIGYVVY RLDSLLIGGW MTAIFTVAGL NIFAALLVLR KAFGQKDYRH 300
  301 LTAPILLLVF FWAIAPQNIA EVKDDLGTLS WLAFFLEVIF PYILLLLTII KKRKST