YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044349, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREAVIVKAL RTPVGKAPRG KLRNTRPEDL GALVIKEIIN QTGINPEIIE DVIIGCAFPE  60
   61 AEQGMNLGRV VALRAGLPYS VPGVTVNRFC SSGLNAIADA AMKIMTGMSD VVIAGGIESM 120
  121 SMVPMGGNDL LPNPELMNVM PDAYLSMGLT AENVASRYNI SREEQDEFAY KSHMKAKEAI 180
  181 LGGKFKDEIV PVPVVEKIFD GKKVIEKTEM FEVDEGPRFD TTLEALARLK PVFRQGGTVT 240
  241 AGNSSQTSDG AAAALLMSAE KAEELGLKPI AVFRSFAVGG VEPEIMGIGP VVAIPKALKL 300
  301 AGITLDQVDV FELNEAFAAQ ALAVIKTLEI DPAKVNPNGG AIALGHPLGC TGAKLTATLL 360
  361 SEMQRRRAKY GVVSMCIGGG MGAAGVFELI

Type	Start	End	Confidence
Cytoplasmic	1	367	0.53
Transmembrane Helix	368	387	0.73
Non-Cytoplasmic	388	390	0.72