YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996419, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFFKKALAI VEKDIKAEFH SKEMLSVMLV FALIMLVIFN FAFDVKKQIV NDIFPGIIWI  60
   61 TFFFSGLLGL NRSFFIEKNQ DCLLGLMLAP VDRSVIFLGK MLSNLVFLLI IEILTLPLFF 120
  121 IFLNIPVPQK FGFFLIILFF GSLGFVAIGT FLAALAANTR ASDILLPVLL FPVLIPVILG 180
  181 SVAATKGVFF NLPFSEWSIW LKILGVYDLL FIVVPLMLFE ILLEV

Type	Start	End	Confidence
Cytoplasmic	1	23	0.92
Transmembrane Helix	24	43	0.94
Non-Cytoplasmic	44	52	0.85
Transmembrane Helix	53	75	0.87
Cytoplasmic	76	95	0.94
Transmembrane Helix	96	123	0.79
Non-Cytoplasmic	124	132	0.79
Transmembrane Helix	133	155	0.94
Cytoplasmic	156	163	0.83
Transmembrane Helix	164	185	0.91
Non-Cytoplasmic	186	198	0.80
Transmembrane Helix	199	223	0.83
Cytoplasmic	224	225	0.92