YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044282, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIWEGIKE SIRLILTGDP ELYQILHLTL NVSLTATLLA AIVGLPIGAF LGGKKFWGQK  60
   61 IILGIFNALL GLPPVVVGLW LTMFLWRSGP LGNLNLLYTP KAMILAQFCI ALPEVIVFTA 120
  121 VAFSQISENF FRQVKALGAN RYQQLYLLLK EVRLGLLAAV IAGFGAAISE VGASIMVGGN 180
  181 IYQETRVLTT SILLEVGRGN FGLAIGLSII LMLISFIVVG TLTYWQRKGY

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.86
Transmembrane Helix	32	52	0.91
Cytoplasmic	53	61	0.83
Transmembrane Helix	62	84	0.92
Non-Cytoplasmic	85	102	0.89
Transmembrane Helix	103	124	0.92
Cytoplasmic	125	153	0.86
Transmembrane Helix	154	175	0.87
Non-Cytoplasmic	176	200	0.90
Transmembrane Helix	201	225	0.90
Cytoplasmic	226	230	0.93