YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044243, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.98
Transmembrane Helix	11	30	0.96
Non-Cytoplasmic	31	47	0.89
Transmembrane Helix	48	70	0.94
Cytoplasmic	71	89	0.92
Transmembrane Helix	90	110	0.91
Non-Cytoplasmic	111	119	0.68
Transmembrane Helix	120	142	0.90
Cytoplasmic	143	151	0.88
Transmembrane Helix	152	172	0.94
Non-Cytoplasmic	173	189	0.93
Transmembrane Helix	190	209	0.97
Cytoplasmic	210	229	0.91
Transmembrane Helix	230	252	0.90
Non-Cytoplasmic	253	280	0.93
Transmembrane Helix	281	303	0.91
Cytoplasmic	304	318	0.78
Transmembrane Helix	319	335	0.87
Non-Cytoplasmic	336	343	0.68
Transmembrane Helix	344	366	0.93
Cytoplasmic	367	374	0.79
Transmembrane Helix	375	397	0.93
Non-Cytoplasmic	398	398	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEIKARSR FFYKFTAFMG PAFLVSIGYI DPGNWAANFA GGSRYGSIML ITVLLCNFLA  60
   61 ILFQSLVAYL TLKTGKSLAE NIVEKLPKPL VAFYGVLAVT GAMATDVAEF VGAALGFSLI 120
  121 LGLDLLKSVI IAVVFVVCGY FFERQGNRKV EFLIMGFLAA IGFTYLMELL ILKPKIYNLI 180
  181 NLGVKLDGDF LFVVLSMLGA TVMPHNLFLH SDLIAEKLKQ RIITTKDFPV VFLENLIALN 240
  241 LAFLVNSAMI VVAKDMFYDC GVAVDSLRLA YHTLEPVLNG WAALIFGLAL VLCGLSSSLT 300
  301 GTIAGQNLLE KFLPVNLSAL SRKMIIITPA LYFFLKGLGE IELLLLSQVV LSFVLPFVLI 360
  361 VLLWFLNNIA NKYLLILGWF LTAIIGSCNV ILLWTAIF