YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044226, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANYIVRRLL QLIPVLFGIT FLSFMLIHFI PGDPVTVILG EHASPERAAE LREQLGLNDP  60
   61 LYKQYLKFLN NLLHGDLGRS IITHEKVLKE LATFFPATVE LTLAAMFIAT IIGIAAGIVA 120
  121 AVKQYSWFDN LSMIGALTGV SMPIFWLGLM LIYLFAQVLG WLPPSARLSI EYSVPTVTNL 180
  181 YLIDTLLAGN WAAFKDALAH LILPALALGT IPMSIIARMT RSSMLEVLRQ DYIRTARAKG 240
  241 LGEATVILKH ALKNAFLPVV TVIGLQFGYL LGGAVMTETV FSWPGVGRYI YQAIMARDFP 300
  301 VVQGSITIIA LIFVLINLIV DILYTVIDPR IRYQ

Type	Start	End	Confidence
Cytoplasmic	1	8	0.97
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	100	0.98
Transmembrane Helix	101	122	0.93
Cytoplasmic	123	133	0.79
Transmembrane Helix	134	156	0.90
Non-Cytoplasmic	157	196	0.95
Transmembrane Helix	197	217	0.93
Cytoplasmic	218	254	0.94
Transmembrane Helix	255	277	0.87
Non-Cytoplasmic	278	303	0.88
Transmembrane Helix	304	327	0.87
Cytoplasmic	328	334	0.97