YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044207, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.85
Transmembrane Helix	7	26	0.95
Cytoplasmic	27	38	0.69
Transmembrane Helix	39	63	0.84
Non-Cytoplasmic	64	74	0.84
Transmembrane Helix	75	100	0.86
Cytoplasmic	101	117	0.87
Transmembrane Helix	118	136	0.80
Non-Cytoplasmic	137	140	0.58
Transmembrane Helix	141	159	0.74
Cytoplasmic	160	187	0.82
Transmembrane Helix	188	208	0.92
Non-Cytoplasmic	209	213	0.78
Transmembrane Helix	214	234	0.92
Cytoplasmic	235	252	0.87
Transmembrane Helix	253	276	0.92
Non-Cytoplasmic	277	284	0.69
Transmembrane Helix	285	303	0.97
Cytoplasmic	304	310	0.70
Transmembrane Helix	311	329	0.93
Non-Cytoplasmic	330	334	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYLGGLLIF NLLLILGGAL TFTNAVEWFG RRFGFNQGAV GSIFAAVGTA LPETMVPVIA  60
   61 IFFGSQTDHS TEIGIGAILG APFMLITIGF MVTGTASVLF SRRRTFGSEV VLERGLFLRD 120
  121 IKSFLLFYTL SYLAAFVPHS FMQRSIALIL VFGYLIYVYK TVNEDSGEIG EVDPLIFTPQ 180
  181 RTIPRIRAIL LQLIISLLMI VVGAKYFVAN LTQLAHLIGI SPMALSLVIT PIATELPEKF 240
  241 NSVVWMRSGK DTLALGNITG AMVFQSSVIT SIGIIFTSWR LSTDVVLSGI LAFFAAVAAL 300
  301 FLVNFRRRLS AWTLIFNGCI YIFYLIYIFN RRIA