YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044201, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	43	0.88
Non-Cytoplasmic	44	93	0.80
Transmembrane Helix	94	114	0.80
Cytoplasmic	115	118	0.58
Transmembrane Helix	119	138	0.71
Non-Cytoplasmic	139	145	0.47
Transmembrane Helix	146	164	0.86
Cytoplasmic	165	170	0.43
Transmembrane Helix	171	188	0.63
Non-Cytoplasmic	189	209	0.72
Transmembrane Helix	210	230	0.91
Cytoplasmic	231	238	0.90
Transmembrane Helix	239	263	0.88
Non-Cytoplasmic	264	301	0.97
Transmembrane Helix	302	323	0.93
Cytoplasmic	324	331	0.91
Transmembrane Helix	332	351	0.92
Non-Cytoplasmic	352	359	0.75
Transmembrane Helix	360	377	0.93
Cytoplasmic	378	387	0.78
Transmembrane Helix	388	407	0.84
Non-Cytoplasmic	408	518	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKKTKTLA NKESNVISFS ISMVYEKVII ILIILAALIF RLYQINEPFI GLHDWSSADL  60
   61 ARCAKSFFTF GFFNLKGIPV MNVVPPLDGH LQYYYDWPFL IYYLFAISFK IFGFGEWSVR 120
  121 IVEVLFSSGS VYLIYLIVKE LWDSEVALIS AFIFALIPLN VYYGRVGVFE TPNVFFMLLM 180
  181 LYGYIRWIKE FKRKDYLIFL AGFLLGAFEA WQIYTVAFVV FLHALWLYLF KGKKSRKFLS 240
  241 LVFLFAIIVI VSGLMQLAYL YFALGMDAVK GLFAAGKTRT ATDSMGITFT ISQYLNEEFS 300
  301 RIFTRAGVFN FILALIGLVF IGLKQFKKEE KTNLDILIVF FLSGTIWLVV MKNHSFIHEY 360
  361 TLLHFMPFLS MAVALGVKEL SKIFVTAFKN WKVGLAVILL LLAVVSVENI PKTFEIFNLD 420
  421 LYGNLRLTGL ALKESTENNA VCITPQNHPG PPTIDYYAER VILYNKQDLA NIPPNRPVYQ 480
  481 FYIFEQGLVQ EFKNYFAKNN PKIVYLQNGY VAGIVKIR