YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996241, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSKGNAF LKNNYDLIVA GFVILTLVLI IIPLPPFMLD ILLVFSITFS LVILLITLFT  60
   61 TEPLQFSIFP TLLLVMTLYR LALNISSTRL ILSQASAGQV IQAFGSFVVG GSYVVGFVVF 120
  121 LIITVIQFVV ITNGAGRVAE VAARFTLDAM PGKQMAIDAE FNAGLITEQE ARQKRRKLQR 180
  181 EADFFGAMDG ASKFVRGDAI AGIVILLINI LGGLIIGVIQ MKMPVLQALQ TYTVLTIGDG 240
  241 LVSQIPALLI STATGILVTR ASADENFGRE FTKQVGAFPK VLIMAAIIIF LLGLIPAMPN 300
  301 LLFISLAGLL GYGGYLAVRY TGQVKDKAQP VIEVPKKREP ENVLNYFNID PLEIEIGYNL 360
  361 ITLTDETQGG DLLGRLAAVR RQLALELGLY VRPIRIRDNL QLPPNQYVFK LRGAEAEKGE 420
  421 LLPGYVLVLD PTGEKTPEQG IPTKEPAFGL EAWWVRESQK ANLEMEGFTV IEPSAVLVTH 480
  481 LTEFIKKNAA EILGRQEVKE LLETLKQNQP AVVEEVYPEL LTLGEIQKVL QSLLKENVSI 540
  541 RDLTSILEAL ADAVRQNRDP DFLIEQVRQK IRRQIVRQYL HEGKLYAVTL TPQWEQQIAE 600
  601 SLQPTSLGIY PLLDTARTEQ FIEKVKQTLT EVTRRGLYPI IITSSRVRLP LRRLLDRFYP 660
  661 QAILLGINEI PPDVEVEILG TVN

Type	Start	End	Confidence
Cytoplasmic	1	13	0.88
Transmembrane Helix	14	34	0.91
Non-Cytoplasmic	35	40	0.69
Transmembrane Helix	41	60	0.93
Cytoplasmic	61	67	0.70
Transmembrane Helix	68	92	0.72
Non-Cytoplasmic	93	108	0.71
Transmembrane Helix	109	131	0.85
Cytoplasmic	132	198	0.94
Transmembrane Helix	199	219	0.94
Non-Cytoplasmic	220	239	0.83
Transmembrane Helix	240	261	0.86
Cytoplasmic	262	275	0.91
Transmembrane Helix	276	297	0.87
Non-Cytoplasmic	298	683	0.55