YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996174, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKKQELLI QYIFFLTAMV VCFTIAAIVV FVGKQGLKTF LAVSPLEFFG STKWAPDQNQ  60
   61 FGALTFISSS FFVTLLALLL GGPLGIAGAM FSAKIVPSWL TGYLRTVVDL LAGIPSVVYG 120
  121 WVGLTIIVPA IRQISPNQNG FGLLAAGIIL AIMILPTVLS LAEDALRSVP RSLEEASYAL 180
  181 GATRWQTIWH VLLPAAAPGI ITGLVLGMAR AIGETMAVQM VIGNTPLFPR SLFQPTATLT 240
  241 SEIVMEMGNT AFNSTWNNAL FLMAFVLLLI ALGLILLVRK FTASKEEGH

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	32	0.90
Non-Cytoplasmic	33	69	0.86
Transmembrane Helix	70	91	0.88
Cytoplasmic	92	106	0.77
Transmembrane Helix	107	131	0.82
Non-Cytoplasmic	132	140	0.85
Transmembrane Helix	141	162	0.93
Cytoplasmic	163	187	0.91
Transmembrane Helix	188	212	0.87
Non-Cytoplasmic	213	258	0.93
Transmembrane Helix	259	278	0.96
Cytoplasmic	279	289	0.88