YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044028, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVLLLFGSL LFILGGAVLF TNGVEWLGKK FNLNEGTVGS VLAAVGTALP ETMIPIIAIL  60
   61 FGTGADAHAI GVGAILGAPF MLSTIAMFLA GLSALAFKRR ENRLELAVNG EVFKRDLTFF 120
  121 LPFYALALLA SFLPYAGKVI VALVLVGAYA YYLKITITAP AGEENCHELD RCYFAPRHDD 180
  181 PPTLAIIAQV LVALTMIVLG ADEFVKGIET AAKAAGIPPL VLSLVIAPIA TELPEKFNSI 240
  241 IWIRDQKDTY ALGNITGAMV FQSTLIPAFG IVFSDWHLDF YAGLSGILAL TAGLLAYLGY 300
  301 RWQKKLSARL LLINGLLYLV FIYFVVRG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.84
Transmembrane Helix	6	27	0.90
Cytoplasmic	28	37	0.84
Transmembrane Helix	38	61	0.88
Non-Cytoplasmic	62	71	0.73
Transmembrane Helix	72	97	0.86
Cytoplasmic	98	116	0.91
Transmembrane Helix	117	150	0.72
Non-Cytoplasmic	151	182	0.59
Transmembrane Helix	183	205	0.76
Cytoplasmic	206	249	0.61
Transmembrane Helix	250	272	0.84
Non-Cytoplasmic	273	279	0.78
Transmembrane Helix	280	300	0.94
Cytoplasmic	301	307	0.82
Transmembrane Helix	308	326	0.93
Non-Cytoplasmic	327	328	0.81