YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDGT_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.94
Transmembrane Helix	10	30	0.91
Non-Cytoplasmic	31	38	0.75
Transmembrane Helix	39	62	0.86
Cytoplasmic	63	76	0.84
Transmembrane Helix	77	96	0.95
Non-Cytoplasmic	97	105	0.77
Transmembrane Helix	106	129	0.78
Cytoplasmic	130	138	0.86
Transmembrane Helix	139	161	0.84
Non-Cytoplasmic	162	165	0.73
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	193	0.95
Transmembrane Helix	194	214	0.91
Non-Cytoplasmic	215	221	0.77
Transmembrane Helix	222	243	0.94
Cytoplasmic	244	251	0.82
Transmembrane Helix	252	273	0.91
Non-Cytoplasmic	274	284	0.71
Transmembrane Helix	285	308	0.88
Cytoplasmic	309	320	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKATLERV PGGMMVIPLF LGTLINTLFP NAANTFGSFT GALLTGALPI LAVFFVCMGA  60
   61 TIDFKATPYI LKKGGALWIT KILIGVIVGV IGAKFLGEGM IKSGPFVGLS VLALVASMND 120
  121 TNGGLYMALM GQFGKKEDVA AYSVMSLESG PFFTMVTLGV AGLSAFPWQM LVGAILPLII 180
  181 GMILGNLDKE LREFFGRAVP VLIPFFAFGL GAKMNLLDVW KAGLVGILVG VAVVVITGTA 240
  241 LFIADRLTGG NGIAGLAAAS TAGNAAAVPA VVASANHAYA PVAPAATAIV ASSVIVTAFL 300
  301 VPIITAWWAK RIGVVNNNAA