YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996022, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.56
Transmembrane Helix	23	43	0.88
Non-Cytoplasmic	44	50	0.46
Transmembrane Helix	51	74	0.80
Cytoplasmic	75	89	0.53
Transmembrane Helix	90	118	0.76
Non-Cytoplasmic	119	174	0.59
Transmembrane Helix	175	195	0.93
Cytoplasmic	196	226	0.94
Transmembrane Helix	227	250	0.87
Non-Cytoplasmic	251	277	0.79
Transmembrane Helix	278	297	0.95
Cytoplasmic	298	311	0.82
Transmembrane Helix	312	330	0.86
Non-Cytoplasmic	331	360	0.75
Transmembrane Helix	361	385	0.89
Cytoplasmic	386	400	0.79
Transmembrane Helix	401	423	0.90
Non-Cytoplasmic	424	425	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSLIALTV FFATYTLIIS EKLHRAIAAL LGGTLLIVLG VLSQEKAIHH IDWNTLGLLI  60
   61 GMMIIVGITK KTGVFQYLAV KAVKWAKGEP VYILIALATV TAFLSAFLDN VTTVLLIVPV 120
  121 TFTITDRLGI NPIPFLISQV LASNIGGTAT LIGDPPNIMI GSQTHLDFLD FLKNLTPVII 180
  181 VIHIVTMFLF YLIYYKEFKV PGELKKKLLE LNELDEIKDF ALLKKSLFVL GLVILGFILH 240
  241 GALGLESATI ALFGAALLLT ITRDEPEEVL LTVEWPSIFF FLGLFIVVGG LVETGVIDRV 300
  301 ARWSLEATKG NFTLTGMLIL WLSAITSAFV DNIPFVATMI PLIQKMGALA GMTPQALEPL 360
  361 WWALSLGACL GGNGTIIGAS ANVIVAGLAE KNGYPISFIS FMKLAFPLML VSVVISMVYL 420
  421 LLFYF