YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996021, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIADGILSP EVLIITAGVS AGVVGLSLKK SKGQLGERQI PMLGVVSAFI FAAQMLNFPI  60
   61 IGGTSGHLLG GMLAAALLGP WNAVLALTTV LFVQAVFFSD GGITALGANV FNMAVIGVFT 120
  121 GYLFYQLMQR IIPGKTGKTL GLIGGSWLSV VAGALAASVE ISLSGLLSFK VAAGALLFWH 180
  181 SFIGLGEAFI TLIAVTYLEK IFGVGFFQGI KEVAINEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.69
Transmembrane Helix	7	28	0.86
Cytoplasmic	29	39	0.67
Transmembrane Helix	40	61	0.86
Non-Cytoplasmic	62	71	0.51
Transmembrane Helix	72	98	0.75
Cytoplasmic	99	102	0.54
Transmembrane Helix	103	125	0.88
Non-Cytoplasmic	126	142	0.57
Transmembrane Helix	143	167	0.80
Cytoplasmic	168	175	0.53
Transmembrane Helix	176	198	0.90
Non-Cytoplasmic	199	218	0.63