YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HPPA_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	30	0.90
Cytoplasmic	31	59	0.90
Transmembrane Helix	60	78	0.96
Non-Cytoplasmic	79	88	0.73
Transmembrane Helix	89	109	0.91
Cytoplasmic	110	131	0.82
Transmembrane Helix	132	157	0.86
Non-Cytoplasmic	158	163	0.71
Transmembrane Helix	164	184	0.83
Cytoplasmic	185	232	0.87
Transmembrane Helix	233	252	0.83
Non-Cytoplasmic	253	262	0.63
Transmembrane Helix	263	284	0.94
Cytoplasmic	285	294	0.80
Transmembrane Helix	295	319	0.84
Non-Cytoplasmic	320	326	0.71
Transmembrane Helix	327	348	0.90
Cytoplasmic	349	380	0.73
Transmembrane Helix	381	401	0.81
Non-Cytoplasmic	402	404	0.46
Transmembrane Helix	405	426	0.77
Cytoplasmic	427	460	0.81
Transmembrane Helix	461	482	0.83
Non-Cytoplasmic	483	508	0.83
Transmembrane Helix	509	529	0.91
Cytoplasmic	530	576	0.84
Transmembrane Helix	577	596	0.89
Non-Cytoplasmic	597	601	0.62
Transmembrane Helix	602	621	0.89
Cytoplasmic	622	667	0.83
Transmembrane Helix	668	685	0.54
Non-Cytoplasmic	686	686	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGMTLAYY GLGAGILAIL FALYLFSSVL KEDMGNEKMR EISQAIFEGA MAYLNRQYKT  60
   61 LIPFALVVFV LLVVGFGYKE GDFGYGLKVG VSFLVGAIAS ALAGYAGMTS TTKANARTTQ 120
  121 AARKSLNAAL NVAFRAGGVM GMSVAGLGLL GVSALYIIFK DVHVIDSFAF GASAIAFFAR 180
  181 VGGGIYTKAA DVGADLVGKV EAGIPEDDPR NPAVIADNVG DNVGDTAGMG ADLFESYGAT 240
  241 TMAAMLLGLT FAKNHGFSEV LGATFPLLLG AAGIVAAIIS TFFVRTSEDG NPQMALNIGL 300
  301 WSTNFITAIF TYIIAQYVFG SEWAPKIFIA VVSGLVVNVA IGSLTEYYTS NLKPPAQKIA 360
  361 EASTTGPATN IISGIAVGMR STYLPIIVIV AAIMVGYWAA GFYGIALAAM GMLATAAMVV 420
  421 AVDSFGPVAD NAGGIAEMAE LGPEIRNKTD KLDAVGNTTA AVAKGFAIGS AALTALALFS 480
  481 AYTDLAKTNP NLQKYLVNGK FDLNITDPWV LVGLFLGGTV AFLVAALTME SVGKAAFDMI 540
  541 EEVRRQFREI PGLMEGKARP DYARCVSIST AAAIRQMIAP GLLAVGAPLA IGFILGFKAL 600
  601 TGYLAGVTAT GVLLAIYMAN AGGAWDNAKK YIEAGNLGGK GSDTHKAAVV GDTVGDPFKD 660
  661 TSGPAMNPLM KVAGTFALII VPLLLF