YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043867, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSHWHLED IKKQSRIFNK LDPRIKVTGF FLLIVLSSII KSFIPLFLNL WLAITLVLLA  60
   61 RLPLNFLLTR FLYFFAFAGI FLILLPLVTP GEVAFTLGPV VFSKTGLIKG AVIGIRLVTI 120
  121 WLFISLMLGS TGFRDFLWAL SRIRLPQEFI GTIEFMLRYL ALFSEELKKA QTARKARLFQ 180
  181 EGKNLWHKRT FKILGQTIGM LFYRAYLRGE RVHRAMLARG FNGRWPVLEE KRIKRKDVVF 240
  241 FLLIVFWVLM LLDFEYHGLA WRLIWGLLG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	40	0.74
Non-Cytoplasmic	41	45	0.46
Transmembrane Helix	46	64	0.79
Cytoplasmic	65	70	0.63
Transmembrane Helix	71	94	0.84
Non-Cytoplasmic	95	111	0.75
Transmembrane Helix	112	134	0.85
Cytoplasmic	135	237	0.91
Transmembrane Helix	238	259	0.91
Non-Cytoplasmic	260	269	0.93