YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	32	0.89
Non-Cytoplasmic	33	36	0.75
Transmembrane Helix	37	58	0.90
Cytoplasmic	59	63	0.75
Transmembrane Helix	64	84	0.86
Non-Cytoplasmic	85	89	0.75
Transmembrane Helix	90	110	0.94
Cytoplasmic	111	118	0.74
Transmembrane Helix	119	138	0.82
Non-Cytoplasmic	139	155	0.74
Transmembrane Helix	156	174	0.95
Cytoplasmic	175	203	0.95
Transmembrane Helix	204	226	0.93
Non-Cytoplasmic	227	245	0.84
Transmembrane Helix	246	266	0.92
Cytoplasmic	267	277	0.69
Transmembrane Helix	278	296	0.93
Non-Cytoplasmic	297	322	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKNWLTKEN LTVTVLLLVL MLGVQVLYSA GILSPFVMLN LIIIAINIIL AVSLNLVVGF  60
   61 TGQFSIGHAG FMALGAYASA IMTLNFNAPF IVSLLVGAIV AGIGGIIIGI PTLRLKGDYL 120
  121 AIATLGLAEI IRGVITNIDY LGGAYGLMGI TQRTNWLWAF GCMLVTVMVI KNFVQSSHGR 180
  181 ACISVREDEI AAEVMGINTT KYKVIAFTMG SFFAGIGGAL LAHYITFIEP NAFNFLKSFD 240
  241 ILVMVVLGGQ GSLTGSVVAA IVLTLISTFL QSLAELRLII YAIILILVML FRPQGLLGTH 300
  301 ELSFKLLQRK RGVSHGNHSA NA