YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043696, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGIFITVVI ALILDIVFKD PGQDYHPVAL IGRYIAFIEK KLYPKKPAKK ALILCGGLLV  60
   61 GLTLLPVSFI AFIYQHFTQK LPFLFQVVFQ GGGLFFAIAP TGLAFSVNTI KNHLKDGNLA 120
  121 EARKSLGMIV SRDTRELPVT EVVRGSLESL AENTGDGVVA PIFWYLIGGL PGVWFYRTVN 180
  181 TLDSMVGYKS ERYLYFGRIA AKLDDLLNYL PARITGVLMV LAAFILRYDW KRAIKTWLRD 240
  241 AKKHPSPNGG IPESVLAGSL GVRLGGENIY HGQKSFRAYL GEPLNPLTPE VIDKALKLFW 300
  301 FTVFLMVLLF GGFSTVGGV

Type	Start	End	Confidence
Cytoplasmic	1	50	0.98
Transmembrane Helix	51	74	0.93
Non-Cytoplasmic	75	86	0.78
Transmembrane Helix	87	107	0.89
Cytoplasmic	108	156	0.94
Transmembrane Helix	157	176	0.89
Non-Cytoplasmic	177	208	0.93
Transmembrane Helix	209	230	0.88
Cytoplasmic	231	297	0.96
Transmembrane Helix	298	317	0.94
Non-Cytoplasmic	318	319	0.83