YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043624, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKYMSFLKK LDRILEFIEQ NLVAILLMIM TAVVFWGVIT RFVLKDASSW ADEASRYLNI  60
   61 WAIYVGASLA AKRGAHIGVD AFVHFLPKQA QRFAAILAAA INLIFSFAIA YVGYSYTMDI 120
  121 VKTGQLSPAM RIPMAWAYFA VPFGLTLMGI RYLMILIENI TGKSILS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	40	0.97
Non-Cytoplasmic	41	56	0.84
Transmembrane Helix	57	76	0.80
Cytoplasmic	77	92	0.76
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	133	0.85
Transmembrane Helix	134	155	0.93
Cytoplasmic	156	167	0.88