YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043602, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.72
Transmembrane Helix	8	35	0.77
Cytoplasmic	36	54	0.65
Transmembrane Helix	55	76	0.72
Non-Cytoplasmic	77	80	0.56
Transmembrane Helix	81	100	0.88
Cytoplasmic	101	115	0.83
Transmembrane Helix	116	139	0.87
Non-Cytoplasmic	140	155	0.89
Transmembrane Helix	156	179	0.86
Cytoplasmic	180	197	0.87
Transmembrane Helix	198	217	0.92
Non-Cytoplasmic	218	227	0.85
Transmembrane Helix	228	249	0.92
Cytoplasmic	250	256	0.92
Transmembrane Helix	257	277	0.92
Non-Cytoplasmic	278	301	0.87
Transmembrane Helix	302	323	0.92
Cytoplasmic	324	338	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNTVWFLL VGVLIIGYAL LDGFDLGVGS LFYVLGKTDK ERKILINAIG PVWDGNEVWL  60
   61 LTGGGALFAA FPLVYASVFS GFYLAMMLVL FALIFRAVAV EYYFKVDTPG LQKLMGGLFF 120
  121 LGSFLPALLF GVAVGNVVYG IPLDAEQNYA GTFFGLLKPF ALCFGIVGLF AFLLQGAAYA 180
  181 ALKTEGDQQK RARDLSKNFA VILLVLWLIG GIYSKMAAPH LWENYQKLPL LYVLPLITLV 240
  241 SLILIPGWVR KNAYQKVFTA SSIAFATMIL TVAAGLYPNW VIATDPVKNL TIYNASSSPL 300
  301 TLKVMLIVAL IGVPIVLLYT IYTYRVFRGK ASPERNGY