YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CBIM_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEGMLKTNF RLLFLLIFLL IPTPVLAMHI MEGFLPVKWV IFWDLVTLPF IMVGFIRLQR  60
   61 EATQGPGAKL MLAFAGAFIF VLSALKMPSV TGSCSHPTGT GLAAILFGPF ITTVLGFIVL 120
  121 IFQALLLAHG GLTTLGANTF SMAVAGPLVA YGVYKGLQKA GINSNFSIFL AAMLGDLVTY 180
  181 IVTSVQLALA FPGSSLFLSA LKFMGIFALT QIPLAISEGI LTVLTYNFLS RYEDAKIWVE 240
  241 KGEH

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	31	0.91
Non-Cytoplasmic	32	38	0.82
Transmembrane Helix	39	58	0.92
Cytoplasmic	59	66	0.85
Transmembrane Helix	67	87	0.89
Non-Cytoplasmic	88	101	0.74
Transmembrane Helix	102	122	0.93
Cytoplasmic	123	131	0.61
Transmembrane Helix	132	154	0.80
Non-Cytoplasmic	155	167	0.71
Transmembrane Helix	168	191	0.79
Cytoplasmic	192	199	0.51
Transmembrane Helix	200	224	0.69
Non-Cytoplasmic	225	244	0.67