YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043553, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVVVTGLG LISPLGIGIK ENWDNLMKGV SGVREVSSFD TTGFATRIAA EVRDFDPLKF  60
   61 IDKKEARRMD RFTQFAVAAT KLAIEDAGLE LSKINPERAG IFIGSGIGGI KTLEEQAAIL 120
  121 REKGPDRVSP FFVPMMIANM AGGQIAITFG LTGPNETIVS ACASGANAVG DAFRCLQRGE 180
  181 VDVAIAGGAE AAITPLSFAG FCSMKAMSTR NDEPEKASRP FDKDRDGFVM GEGAGILILE 240
  241 TLEHALARGA RIYGEIVGYG VTSDAYHITA PDPEGKGAAR AMELALKDAR LNPEDIDYIN 300
  301 AHGTSTPLND KVETLAIKKV FGDHAYKLMV SSTKSMTGHL LGAAGGIETI YSILAVFFNQ 360
  361 VPPTLNCDEP EEGLDLDYVP NTGRDTVVKA ALSNSLGFGG HNVSLIVKKF NG

Type	Start	End	Confidence
Signal Peptide	1	18	0.53
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	412	0.79