YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995562, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNFLTPQE IVNFTLETGI KKAKLNFLAS FILGILAGSY IAFGAFAANL ISHSVENFGI  60
   61 AKFLGAAVFP VGLMLVVMAG GELFTGNTLM TIALAERKIT LKAMLNNWLW VYAGNFVGSF 120
  121 LVAYLVGRSG MLELNKGLVA AAALRTAALK ANLTFSEAFI RGILCNILVV LAVWLAYGAK 180
  181 DVVGKVVGIW FPIMTFVLSG YEHSIANMYY FAVGLQAKAL GVAKLAHLKS EFLTNLNWGH 240
  241 IWLYNLIPVT LGNIFGGSIL IGLGYWLVYL YLPRVNELSL AGLLKKFIFG VEKPKLQENN 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	26	0.96
Transmembrane Helix	27	48	0.92
Non-Cytoplasmic	49	65	0.77
Transmembrane Helix	66	86	0.91
Cytoplasmic	87	107	0.80
Transmembrane Helix	108	127	0.95
Non-Cytoplasmic	128	157	0.92
Transmembrane Helix	158	178	0.94
Cytoplasmic	179	185	0.82
Transmembrane Helix	186	205	0.91
Non-Cytoplasmic	206	245	0.86
Transmembrane Helix	246	269	0.90
Cytoplasmic	270	300	0.90