YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043444, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLWVKITKI FKGKGNSSSF KEEKPTRLSQ YKEKKFSGKV EVDVGEIKKI LGNPSDLLIR  60
   61 EFSYYGVAAA AVMIDGLVDK MVVIDGILKP LMVEAKIARE KPADPYKSLK EEMLAIAEIK 120
  121 EVQTLDEFLL AVLSGEVGLL LENCSVALLA SAKGWASRSV TEPMNEVVVR GPQEGFTETI 180
  181 RVNTTLIRRR VRSPYLRFEA LKIGRISQTD VVIAYLEDIA NPQIVEEVRN RLSRIDVDAI 240
  241 LESGYIEEFI EDDPFNIFPQ IKHTERPDKA VADLLEGKVV ILTDGTPLAL IVPATFPEFF 300
  301 QAAEDYYEKY FIGNFLRLIR VLAFFIAMFL PSLYIAIITY HQEMIPTELL INIWASRSGV 360
  361 PFPAFVEALI MEIAFEALRE AGVRLPRPVG QAVSIVGALI IGQAAVEAGI VSTSMVITVA 420
  421 ITGIASFAIP AFNMAVAARI YRFGMMVLAA TFGMFGLMMG FILLVIMLCN TRSFGVPYLA 480
  481 PIAPLSIPDQ RDVVVRLPRW LMVKRPKHFR PLDERRIKEG LRPGFPKGEK RR

Type	Start	End	Confidence
Cytoplasmic	1	317	0.89
Transmembrane Helix	318	338	0.93
Non-Cytoplasmic	339	352	0.77
Transmembrane Helix	353	375	0.75
Cytoplasmic	376	387	0.75
Transmembrane Helix	388	406	0.88
Non-Cytoplasmic	407	414	0.59
Transmembrane Helix	415	436	0.89
Cytoplasmic	437	445	0.71
Transmembrane Helix	446	468	0.92
Non-Cytoplasmic	469	532	0.82