YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995507, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKVFRFNK TMRFFHWSYI TFYFLLAITG AFLYFDFLDW LRPLFGGAQG ARIVHRVAAV  60
   61 GLILSPIISF LLNPKEIWET LKYAYSWKAS DLKFFGEFIK EFFGGHAHYE PQGKYNQGEK 120
  121 LNIVLQSLGW LLFIVSGIVL WRFESFSPEV GMIALIGHDI AFIFTLAYVI GHVYLSLFHP 180
  181 VTRPALKGML TGYVDEEYAK NHHPLWYNEV KQEKQVRGKE KTKTKALSLE K

Type	Start	End	Confidence
Cytoplasmic	1	14	0.95
Transmembrane Helix	15	35	0.93
Non-Cytoplasmic	36	52	0.89
Transmembrane Helix	53	72	0.96
Cytoplasmic	73	122	0.95
Transmembrane Helix	123	143	0.92
Non-Cytoplasmic	144	154	0.85
Transmembrane Helix	155	178	0.84
Cytoplasmic	179	231	0.96