YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043280, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSYRIITAL VALPGFLIVG YLGGVYLKAL TALMALIGFY ELYRMFLTKE LKLYVPLAYV  60
   61 LLLLGFFDLV SREILPYFFF IATGIYYLVQ HQKHSVLEFF YTYTSLMYVF LFIFIYEIRS 120
  121 TPLGFRLFLF YFLLIWANDT FAYFVGKKFG RRKIAPALSP KKSVEGALGG LLGALFIAFL 180
  181 YGRFVLGSLT LLPLAFVTAL IAQAGDFLES AIKRFAGVKD SGEILPGHGG ILDRFDGVLL 240
  241 SAPVFYYLYL LFN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	37	0.73
Non-Cytoplasmic	38	54	0.49
Transmembrane Helix	55	89	0.70
Cytoplasmic	90	98	0.82
Transmembrane Helix	99	118	0.93
Non-Cytoplasmic	119	126	0.75
Transmembrane Helix	127	146	0.94
Cytoplasmic	147	163	0.92
Transmembrane Helix	164	185	0.85
Non-Cytoplasmic	186	188	0.68
Transmembrane Helix	189	209	0.71
Cytoplasmic	210	230	0.69
Transmembrane Helix	231	250	0.56
Non-Cytoplasmic	251	253	0.43