YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KHSE_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCVLIPATS ANLGPGFDAV GMALSFYNEV SLGPSPKELE IEVFGDGAEL ISRDKNNLVY  60
   61 VAITKIFERL GKTPRNLKLT LKNRVPLARG LGSSAAAIVG GLVAANAYLG NPLPKDELLR 120
  121 LATELEGHPD NVAPALLGGV VVSGFDRDKV KYLKLPVPEV EVVVAIPKFQ LKTADSRQIL 180
  181 PAEIPFSQAV LNVNRVSFLI AAFCLKKYEY LQIGMEDYLH QPYRSQLIPG FYQVVEEAKK 240
  241 AGAYGVALSG SGPTVIALAR EGKAVGRAIE ETFLNFGVEA EIIYTRPEER GAIDLINYKG 300
  301 EGDC

Type	Start	End	Confidence
Cytoplasmic	1	86	0.68
Transmembrane Helix	87	109	0.65
Non-Cytoplasmic	110	304	0.93