YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043180, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	29	0.93
Non-Cytoplasmic	30	35	0.93
Transmembrane Helix	36	58	0.91
Cytoplasmic	59	75	0.92
Transmembrane Helix	76	96	0.91
Non-Cytoplasmic	97	106	0.81
Transmembrane Helix	107	128	0.90
Cytoplasmic	129	139	0.80
Transmembrane Helix	140	158	0.96
Non-Cytoplasmic	159	178	0.86
Transmembrane Helix	179	201	0.86
Cytoplasmic	202	210	0.84
Transmembrane Helix	211	232	0.93
Non-Cytoplasmic	233	263	0.91
Transmembrane Helix	264	284	0.89
Cytoplasmic	285	297	0.81
Transmembrane Helix	298	315	0.96
Non-Cytoplasmic	316	327	0.84
Transmembrane Helix	328	349	0.94
Cytoplasmic	350	359	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITGIQLLF IQFILILSAI DIFMPSVIAK EVGPDAWLSI ILAFIFSVFL AWIYAYIGCK  60
   61 IYPDNLTSYL KKRGTLGKAI LFAYFYLYFI LIITVYREFL ELVKVFLPQT PLLVIGILMQ 120
  121 LVIFYGVLSG TETMARATEI LTPFGIFALI LVAGYALTKA DFGNFKPFLL RGIFPVIKGS 180
  181 IEIINFFGDT LLLWFFAINF YSKPEKLFRL LVVGYFFICI ALFGGVLGVA VFGVKCAAKM 240
  241 ELVALEMVRI VNIADFLKHL DSVMLGVWSI GGVLKLTFLY LGLAELFKAV INVKKAELHI 300
  301 LPLSVLALIS AIYGFENMGK YFSYLGELTY FTLIFSVLIP LLFVFFLFLT KNKKLQQKI