YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043165, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.98
Transmembrane Helix	46	65	0.92
Non-Cytoplasmic	66	75	0.74
Transmembrane Helix	76	93	0.94
Cytoplasmic	94	102	0.88
Transmembrane Helix	103	124	0.89
Non-Cytoplasmic	125	132	0.67
Transmembrane Helix	133	151	0.87
Cytoplasmic	152	159	0.84
Transmembrane Helix	160	182	0.92
Non-Cytoplasmic	183	201	0.85
Transmembrane Helix	202	220	0.95
Cytoplasmic	221	239	0.68
Transmembrane Helix	240	262	0.88
Non-Cytoplasmic	263	269	0.81
Transmembrane Helix	270	291	0.94
Cytoplasmic	292	302	0.79
Transmembrane Helix	303	325	0.93
Non-Cytoplasmic	326	339	0.85
Transmembrane Helix	340	361	0.93
Cytoplasmic	362	390	0.77
Transmembrane Helix	391	409	0.76
Non-Cytoplasmic	410	428	0.87
Transmembrane Helix	429	453	0.86
Cytoplasmic	454	461	0.92
Transmembrane Helix	462	483	0.93
Non-Cytoplasmic	484	489	0.79
Transmembrane Helix	490	509	0.97
Cytoplasmic	510	528	0.93
Transmembrane Helix	529	552	0.92
Non-Cytoplasmic	553	801	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDGERTFK FKIPYLDEAK LIHSKESIGT LKFKIPYLDE VKPYKTMWFI LLLGFSLLFL  60
   61 LPPFYRGLFF EYEQEVATLW AIILVWLVYT LELGEKKPKF LQLTLDYAVL ALPIIYLISI 120
  121 INAANIGFAV DEFVQNILYF LVFWLATRFG ADQNARRVLL HAVYLAAIGV SLAGLMTATG 180
  181 VINIRDGYLS GRIYSSFQYP NALASYLAAA FLIGIYLWVS SNKALRYFYG IGNYIILTVL 240
  241 LGTKSNGGLM VFLAIMVLYF IFQPPGKRFA IFFHLFLNLA LAFVVIKSFI YHVDVTGQTG 300
  301 NSWLWFLVGL IIAIMIEVII QFIVLNKAVI TIFTKYKKPL IYMFLGFMVV ALIGGLILVL 360
  361 SNEVLREKIY ELLRIRNASE RGYFYRDALK MFFKSPLIGW GGGGWGEAYR AFQSYFYIST 420
  421 QVHSYYLQLF VETGVLGVAT IVTIIGSFFK YFINLWRKTS DYWLSFEVVT LGAVIINIAG 480
  481 HAAIDFDLSL AALSLVLFLA LGFIRTLYFT AISKPLPEKN KRKVQFNSIP YFTLISVIAI 540
  541 GLLIFVGMLA TASHYEYSAY SYYQAQDLQG LKNVMENAAR YNPFNASYNE KLRDIYKSFG 600
  601 DLNNALLQAE KAVAKSKYDP YKKIELSYLY YQTGQIDKAA DLTDKFISDA PFMAVVYDAA 660
  661 ARVNMMCGLA AVRNGDLTKA REYFNKVVKV RDLEEKQITK YTPETRKLQV VAPVLSVTPE 720
  721 VKLNVGIAYY FLKDFAKARE NLLVSKEKTD LAAESLLWLT VLESKAGNTE LAGKYKKELE 780
  781 KAPGGGQLVN KIGEFLSLPL L