YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995252, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTKITELLK IKYPIIQGGM AWVATARLAA AVSNAGGLGI IGAGNAPAEW VLAEVRKVKN  60
   61 LTDKPFGVNV MLLSPHVDEV MEVIIEEKVP VITTGAGNPG KYIKKLKENN VKIIPVVASV 120
  121 ALAKRLEKTG VDAVIAEGHE SGGHIGELTT MALVPQVVDN VSIPVVAAGG IADGRGLVAA 180
  181 LALGAQAVQI GTRFLCAEET EIHPAVKEAV IKAGDRDTVI TGASTGHPVR VIKNKLARRF 240
  241 LELEQKGAPP EELEKLGAGS LRRCMQEGDI EEGSLMAGQI AGLIKEIKPV KEIIEEIMHE 300
  301 AREIMKRIVR EFDE

Type	Start	End	Confidence
Signal Peptide	1	31	0.40
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	314	0.92