YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995161, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.75
Transmembrane Helix	8	32	0.90
Non-Cytoplasmic	33	46	0.72
Transmembrane Helix	47	68	0.82
Cytoplasmic	69	79	0.60
Transmembrane Helix	80	106	0.77
Non-Cytoplasmic	107	107	0.44
Transmembrane Helix	108	126	0.84
Cytoplasmic	127	133	0.78
Transmembrane Helix	134	157	0.86
Non-Cytoplasmic	158	168	0.82
Transmembrane Helix	169	192	0.92
Cytoplasmic	193	211	0.91
Transmembrane Helix	212	232	0.90
Non-Cytoplasmic	233	238	0.71
Transmembrane Helix	239	256	0.95
Cytoplasmic	257	266	0.79
Transmembrane Helix	267	291	0.86
Non-Cytoplasmic	292	311	0.75
Transmembrane Helix	312	343	0.78
Cytoplasmic	344	352	0.50
Transmembrane Helix	353	375	0.85
Non-Cytoplasmic	376	394	0.58
Transmembrane Helix	395	419	0.80
Cytoplasmic	420	425	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANILFTLFI IFVVLNVPIG IAIGLSTFGA ILASQKVPLF LVAQRLFTGL DSFPLLAIPL  60
   61 FMIAGSLMES GGISKRLINF ASNIVGPIPG GLAMVTVLAC MFFAAISGSA PATVVAIGSI 120
  121 MVPAMIEAGY DKDFAVGLIA ASGMIGVLIP PSIPFVTYGI TMNASIGKLF LAGIVPGVLF 180
  181 GLSFMIISYF YAKKRGYKGT AKPTWKSFLT SFKEAIWALG MPAIILGGIY GGVFTPTEAA 240
  241 AVACVYSLIV GFFIYRELTL QNMFKSFANA GVSSAMVGLI IAAATAMGWV LTTEQVPTNV 300
  301 ATAISSIAHS KFMLLLLINL ILLITGCLME LNAAIIILGP IFLPLIMQYN IDIIHFGVIM 360
  361 VVNLTIGLLT PPLGVNLFVA NGLQKDLTLS QVVKASLPFM IFAIIDLMIL TYVPNLSLYL 420
  421 THLLK