YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995151, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.83
Transmembrane Helix	16	35	0.91
Cytoplasmic	36	61	0.89
Transmembrane Helix	62	84	0.81
Non-Cytoplasmic	85	91	0.70
Transmembrane Helix	92	115	0.88
Cytoplasmic	116	135	0.97
Transmembrane Helix	136	156	0.94
Non-Cytoplasmic	157	171	0.82
Transmembrane Helix	172	195	0.90
Cytoplasmic	196	203	0.89
Transmembrane Helix	204	225	0.92
Non-Cytoplasmic	226	232	0.87
Transmembrane Helix	233	256	0.82
Cytoplasmic	257	291	0.94
Transmembrane Helix	292	314	0.88
Non-Cytoplasmic	315	350	0.94
Transmembrane Helix	351	374	0.90
Cytoplasmic	375	389	0.91
Transmembrane Helix	390	408	0.90
Non-Cytoplasmic	409	414	0.58
Transmembrane Helix	415	436	0.84
Cytoplasmic	437	484	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLVDFLNS LVWSKALVYF CLLAGIYFSI RMRFFQVRYI KDMWKLLFGG QSSEKGVSSF  60
   61 QAFAMAVAGR VGTGNIAGVA TAIAMGGPGA VFWMWVTAFL GAGSAFVEAV LAQIYKEEHE 120
  121 GEYRGGPSYY IEKGLGLKWY AVIFSVATIV ATGLLLPGVQ ANSIAASINN AFGVAPAITG 180
  181 VGLVLLLGLI IFGGVKRIAR AAEFIVPFMA LGYILVAIII IAVNIEKLPG VLALIFESAF 240
  241 GLKQAFAGIL GYAIFWGVKR SVYSNEAGQG TAPHAAAAAE VSHPAKQGLV QAFSVYVDTL 300
  301 FVCSATAFMI LITGKYNVYN PKGGFIVENL PGMDIGPGYT QRAVETLFPS FGAAFVAIAL 360
  361 FFFAFTTLMA YYYYAESNIA YLTRKGSSRL FINVLRVALL ASTFYGTIRT ATFAWGLGDL 420
  421 GVGIMAWLNL IAILLLQKPA LKAFEDWKEQ RAKGIDPVFD PIKLGIKNAD LWVQKFGKKQ 480
  481 VAGE