YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995137, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKNKKLLI TGILLILTLG VSSLALAEPL TIPNIQLNIN GQGSPQEVVN SVKLLVLLTV  60
   61 LALVPAFLLL MTSFTRIVVV LSLLRNAMGT QQAPPNQVLI GLALFLTIFI MSPVINKINQ 120
  121 DAIQPYLNNQ ITQEQAIRAA EAPLKDFMLK QTREKDLALF IELAKLPRPQ TKDDVPFTVV 180
  181 VPAFIISELK TAFQMGFMLF LPFLIIDMVV ASILMSMGMF MIPPMLVALP FKLLLFVLAD 240
  241 GWYLVVKSLV SSFS

Type	Start	End	Confidence
Signal Peptide	1	27	0.71
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	54	0.93
Transmembrane Helix	55	79	0.83
Cytoplasmic	80	97	0.80
Transmembrane Helix	98	115	0.80
Non-Cytoplasmic	116	194	0.77
Transmembrane Helix	195	220	0.79
Cytoplasmic	221	225	0.49
Transmembrane Helix	226	246	0.80
Non-Cytoplasmic	247	254	0.61