YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSD_CARHZ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEPLVMYRE GFWYLVALGV LTVLGALINF WLGLLVFLLF LFVVFFFRNP RRTIPEDEKA  60
   61 IISPADGVVL DVAEVNESYY LKGPAVKISI FLSIFDVHVN RAPVEGQVEY VYYREGKFLP 120
  121 AFKSHASEIN ERNYIGIKNP YLQVLVVQIT GFIARRIVSF VKPGDILKKG QLLGMIKFGS 180
  181 CTEIYLPKET VEVLVQKGQR VYGGITVIGR IKG

Type	Start	End	Confidence
Cytoplasmic	1	11	0.70
Transmembrane Helix	12	45	0.88
Non-Cytoplasmic	46	213	0.63