YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77995096, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEVVILSAV RTAIGKFGGS LKDIPAAELG AIVIKEALVR AQIPPAEVDE VIFGNVLQAG  60
   61 QGQNPARQAA IKAGIPVDIP AMTVNMVCGS GLRSVSLAAT LIAAGEADLI VAGGMENMSA 120
  121 APYAIPGARW GTRMGDGKIV DLMIKDGLWD AFYDYHMGIT AENLAERYNI SREEQDRFAL 180
  181 ESQRRAEKAI KEGRFRDEIV PVKLPQRKGE PLEFVQDENP RFDTTLEALA KLKPAFKEGG 240
  241 TVTAGNASSI NDGAAALVIA SSKKAESLGI KPMAVIRSWG ATGVDPSIMG IGPVGATRKA 300
  301 LKRAGLTIAD IDLVEANEAF AAQALAVAKE LELDLSKTNV NGGAIALGHP IGASGARILV 360
  361 TLLHEMKKSN SRYGLATLCI GGGMGVAAIV EKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	341	0.82
Transmembrane Helix	342	361	0.47
Cytoplasmic	362	370	0.54
Transmembrane Helix	371	390	0.65
Non-Cytoplasmic	391	393	0.79