YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	29	0.85
Cytoplasmic	30	46	0.95
Transmembrane Helix	47	67	0.92
Non-Cytoplasmic	68	72	0.82
Transmembrane Helix	73	93	0.92
Cytoplasmic	94	100	0.85
Transmembrane Helix	101	121	0.91
Non-Cytoplasmic	122	127	0.83
Transmembrane Helix	128	150	0.86
Cytoplasmic	151	157	0.70
Transmembrane Helix	158	176	0.96
Non-Cytoplasmic	177	181	0.86
Transmembrane Helix	182	202	0.91
Cytoplasmic	203	207	0.89
Transmembrane Helix	208	230	0.87
Non-Cytoplasmic	231	234	0.84
Transmembrane Helix	235	257	0.89
Cytoplasmic	258	288	0.93
Transmembrane Helix	289	308	0.93
Non-Cytoplasmic	309	313	0.75
Transmembrane Helix	314	335	0.90
Cytoplasmic	336	348	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVIKTFQIF TLALILTLIL TPMVKKIALR VGAIDIPDAR KVHKTPIPRM GGLAIFWGFT  60
   61 AAVLLLLPID QKVLAILAGS VVLIIFGILD DVYSLNPKVK LLGQIMAAVI PVAFGIKVNY 120
  121 VTNPFGGLIW LGDASYFLTI FWIVAIVNAI NLIDGLDGLA SGTAAISAVF IGIAALTRGN 180
  181 EFAYYAAIAL TGGALAFLKF NFNPAEIFLG DTGSMFLGYC LGILSVLGTA KSPTLISIFV 240
  241 PVLVMAIPIF DTLFAILRRF FAGRPIFKPD KGHLHHCILD LGYSQRKTVL IIYLLNILLG 300
  301 IVALYVNLLT FTQAALLILI ILAAITFGAQ KIGVLGESLS KGKTIINN