YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042888, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFKTAWVIP TLNRPKDIER LFNSYLKQTV KPDKVIIIDG SKNDETKKVC EKFQARIENL  60
   61 IYEYTTKLGS VTQRLLALKY LKDIDYALFL DDDFELNDNA FEILLEKIKT LPPKTCLELN 120
  121 FKTISYGSEI QKLGSSKFFN FFKKIFFLPH ESTEKKVLPS GGNTWLNEYE LILTDELKEV 180
  181 GWLSGCCMFL PVKPLLEKPN YYFNEDLQRF SGYALGEDVY LSVQLAKEGY KFYRVMNAWG 240
  241 IHHKTPSARP DLEKLMAAKV YNLRQIYKVK NKNNLDFLFY FLSIIGNFLL ALFTSLLTKS 300
  301 SGSIKGFFKG LN

Type	Start	End	Confidence
Cytoplasmic	1	276	0.59
Transmembrane Helix	277	298	0.89
Non-Cytoplasmic	299	312	0.62