YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042842, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKILASTIA RVTGGVLLGE DREFTEVSTD TRTLKPYALF VALHGEKLDG HEFVPDAVAK  60
   61 GAAGVVVERP FSINVTQIVV KDTFRALQEL ALYNRQKEGL KVIGITGSNG KTTTKDLVKA 120
  121 VLRQKYNVCA TEKNFNNELG VPLTLLNFDE NTEVGIVEMG MRGLGEIDAL CQVARPDIGI 180
  181 ITNIGEAHLE LLKSQENIAR AKSELIKNLP GDGVAIINGE SPYIKEIVAN IPVKKYFFGH 240
  241 RAGDLYIKKF SQEDDGLRFI TAGILEEEFF LPLFGVHNAV NALAAILTAL TLGVRVPLIK 300
  301 KGLSEVELTG MRLEIQFIGS MKIIKDYYNA SPTSMEAALK VLAGTGQKGR KIAVLGEMYE 360
  361 LGDFETTGHR RVGEVASKLG VDFLITVGPK AREIGNGALA GGMSPQNIFH FATKEEAGSF 420
  421 LLNFLKPEDT VLLKASRGMK FEELFATIER GWFSNGNH

Type	Start	End	Confidence
Signal Peptide	1	14	0.57
N-region	1	5
H-region	6	11
C-region	12	14
Cleavage Site	14	15
Non-Cytoplasmic	15	458	0.85