YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042759, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDAVIVGAV RTPIAKEKGA LKDLPPEVYA AEVIKEVIKR SGLKDSLEVD EVIFGHCLGA  60
   61 VGCMGRVAWL KAGLPLEVPA ITVDRQCGSG STTVNLAASL IWGGVGELYL VGGVESMTRQ 120
  121 PYLMERPTEA FQRTAPAWIP RRTLAPAEIG DPPMGITAEN VAERWQISRE EQDEFAYLSQ 180
  181 KKAARAIQEG RFKEQIVPIV VPQKKGDPVI FDQDEHPRPN TTLEVLAKLP PAFKPGGTVT 240
  241 AGNSSGINDG AAALLIASRQ KAEKLGLKPM ARIVGHAAAG VDPNIMGIGP VPAVKKVLAK 300
  301 TGLTLNDIDV IELNEAFASQ SIAVCRELGI DWRDEEKFNP NGGAIALGHP IAASLAILVV 360
  361 KAVYELKRRQ GRYALITACC GGGQGVATII ENIDD

Type	Start	End	Confidence
Non-Cytoplasmic	1	342	0.90
Transmembrane Helix	343	364	0.65
Cytoplasmic	365	372	0.66
Transmembrane Helix	373	390	0.42
Non-Cytoplasmic	391	395	0.59