YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78042717, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	34	0.86
Non-Cytoplasmic	35	39	0.85
Transmembrane Helix	40	61	0.90
Cytoplasmic	62	80	0.95
Transmembrane Helix	81	102	0.92
Non-Cytoplasmic	103	107	0.83
Transmembrane Helix	108	126	0.93
Cytoplasmic	127	132	0.78
Transmembrane Helix	133	152	0.94
Non-Cytoplasmic	153	159	0.74
Transmembrane Helix	160	180	0.93
Cytoplasmic	181	203	0.91
Transmembrane Helix	204	223	0.90
Non-Cytoplasmic	224	228	0.66
Transmembrane Helix	229	249	0.86
Cytoplasmic	250	258	0.83
Transmembrane Helix	259	280	0.87
Non-Cytoplasmic	281	282	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKIKIFLEM IRFEHTLFAL PYAYVGAFLA SGGVPRLRDF LFITLAMVGA RTAAMSLNRL  60
   61 IDRHIDALNP RTQNRALPRG LIKVSEVYIY TILSLLLFFW AAANLKPLAL KLLPLALFVL 120
  121 VIYAYTKRFT WACHLVLGLA LSFAPLGSFV GIEGYIPLPA YFLAAGVLFW VAGFDIIYAL 180
  181 QDVEFDRQQG LYSIPSRFGI EKALTIARVF HFLTIIFFLL AGIGFGLGFF YYFGVIATAI 240
  241 LLLYEHWLVK PTDLSRVNTA FNNVNMIISV LMFGVTVIDL LI