YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YRDC_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTARPCAGL RAAVAAGMGL SDGPAGSSRG CRLLRPPAPA PALPGARLLR LPESEAVEAA  60
   61 SPERSGWTEA LRAAVAELRA GAVVAVPTDT LYGLACSASC SAALSCVYRL KGRSEAKPLA 120
  121 VCLGRVADVY RYCQVRVPRE LLEDLFPGPV TLVMERSEEL NKDLNPFTPL VGIRIPDHAF 180
  181 MLDLAQMFGG PLALTSANLS SQASSLSVEE FQDLWPHLSL VIDGGPIGDS ESPECRLGST 240
  241 VVDLSVPGKF GIIRSGCALE NTTAILQGKY GLLPSQGSCS

Type	Start	End	Confidence
Signal Peptide	1	27	0.86
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	280	0.99