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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|77968899, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRAFRESDM TEPLASAALH TIELSVDGMH CGGCTGRVQR ALAAVPGVVD ATVDLDAHTA  60
   61 TVTAQETVDA AQLVEAVGAA GYRAAVREPV LEAAAAPHAH PVDVPPAVMA AAASTTSRPL 120
  121 PANTTIELDI DGMTCASCVS RVEKALAKVP GVTRASVNLA TERATVDAAA NVSAARLAEA 180
  181 VTQAGYGATP TVTDGGVAAF APLAPVAPAA PASIELDIDG MTCASCVSRV EKALAKVPGV 240
  241 TRASVNLATE RATVDATPDV TAARLADAVK QAGYGATPVA GAAIPPAAST TPADLELDIG 300
  301 GMTCASCAGR VEKALAAVPG VARATVNLAT ERASVHGAGA LDAATLIAAV TTAGYRASLT 360
  361 AASSAGAAVG TDGQPASPAQ DHDARKHLEA IRERDLVIWS AVLSAPLVAP MLVAPFGIDL 420
  421 MLPGWLQLLL ASIVQFGYGA RFYRAAWHAV KARTGNMDLL VALGTSAAYG LSLWMLLRAP 480
  481 LHPGHLYFEA SAVIVTLVRF GKWLESRAKR QTTDAIRALN ALRPDRARVI EHGIERDVPL 540
  541 AQVRVGTRVS IRPGERVPVD GRIVSGRSHI DESLITGESL PVPKDDVDPV TAGSINGEGA 600
  601 LVVETTAIGA ETTLARIIRL VESAQAEKAP IQRLVDRVSE VFVPAILGIA LLTLVGWLIA 660
  661 GAGTETAILN AVAVLVIACP CALGLATPAA IMAGTGVAAR HGVLIKDAQA LELAQRATVV 720
  721 AFDKTGTLTE GKPSVTAFEA VGVPHDEALA LAAAVQRQSD HPLARAVVAA HDADMAARGG 780
  781 AVPSAIAADA RAVAGRGVEA RVGGQLLALG STRWRDELGI AVPPALDARA AELESAGNTI 840
  841 SWLMRADAPR ALLALIAFGD TVKPGARDAI AALSARGVAS VLVTGDNRGS AAAVAASLGI 900
  901 GEVHAQVLPD DKARVVAELK RTHGGIVAMV GDGINDAPAL AAADVGIAMA TGTDVAMHTA 960
  961 GITLMRGDPA LVADAIDISR RTYRKIQQNL FWAFVYNLVG VPLAALGWLN PVIAGAAMAF1020
 1021 SSVSVVTNAL LLRRWKGRAR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle