YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77967997, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAELRYFFV ALGYFTRVPV PRSIGYAAGD LDQAARYFPL VGACVGAWGA LVYLAALRVL  60
   61 PPSIAVGLSM AATLLATGAF HEDGLADSCD AFGGGYTRDD VLRIMHDSRI GTFGAVALVI 120
  121 SLGVKWQALA SMLPLRAAWT MIGAHAASRA VAVSLLMTLD YVRPEGKAKP VAQRMGARAA 180
  181 CVAALFGLPW LFWPDWRMGV ATCIAVVLVR AWAARYFVKR IGGYTGDCLG FTQQLCELVI 240
  241 YLVVLGWTSS

Type	Start	End	Confidence
Cytoplasmic	1	34	0.47
Transmembrane Helix	35	57	0.83
Non-Cytoplasmic	58	62	0.31
Transmembrane Helix	63	80	0.52
Cytoplasmic	81	109	0.75
Transmembrane Helix	110	129	0.89
Non-Cytoplasmic	130	136	0.73
Transmembrane Helix	137	159	0.80
Cytoplasmic	160	174	0.73
Transmembrane Helix	175	193	0.85
Non-Cytoplasmic	194	197	0.77
Transmembrane Helix	198	214	0.92
Cytoplasmic	215	228	0.72
Transmembrane Helix	229	247	0.55
Non-Cytoplasmic	248	250	0.48