YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77966199, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPRGRGVG GSITDPNATT RNLMNPNSKH PASPMAIARS IYRNRGLILQ MTQREVVGRY  60
   61 RGSAMGLAWS FFNPVLMLVV YTFFFSVIFK SRWGTTSDDK ASFAIVLFVG LILHSLLAEC 120
  121 INRAPTLILA NVNYVKKVIF PLEILPVVAL ASALFHSAIS LLVLIIAECI LIHSLPWTAI 180
  181 LFPVVMLPLI IGSLGLAWFL SALGVYIRDI AQITGVITSV LMFLSPVFYP VSNLPPQYRS 240
  241 WIELNPLTFI IEEGRNTLIF GHPPDWTNWL TCMIASLLLA WFGFWWFQRT RKGFADVL

Type	Start	End	Confidence
Cytoplasmic	1	66	0.96
Transmembrane Helix	67	89	0.87
Non-Cytoplasmic	90	100	0.91
Transmembrane Helix	101	121	0.89
Cytoplasmic	122	143	0.83
Transmembrane Helix	144	167	0.85
Non-Cytoplasmic	168	178	0.70
Transmembrane Helix	179	200	0.93
Cytoplasmic	201	209	0.76
Transmembrane Helix	210	231	0.90
Non-Cytoplasmic	232	265	0.97
Transmembrane Helix	266	287	0.92
Cytoplasmic	288	298	0.96